NPs Basic Information

Name
(7S)-(-)-10-hydroxysydonic acid
Molecular Formula C15H22O5
IUPAC Name*
4-[(2S)-2,5-dihydroxy-6-methylheptan-2-yl]-3-hydroxybenzoic acid
SMILES
CC(C)C(CC[C@@](C)(C1=C(C=C(C=C1)C(=O)O)O)O)O
InChI
InChI=1S/C15H22O5/c1-9(2)12(16)6-7-15(3,20)11-5-4-10(14(18)19)8-13(11)17/h4-5,8-9,12,16-17,20H,6-7H2,1-3H3,(H,18,19)/t12?,15-/m0/s1
InChIKey
CUDGWHYJFVSILF-CVRLYYSRSA-N
Synonyms
CHEMBL3577362; (7S)-(-)-10-hydroxysydonic acid; J3.493.741I; 3-Hydroxy-4-[(1S)-1,4-dihydroxy-1,5-dimethylhexyl]benzoic acid
CAS NA
PubChem CID 122177659
ChEMBL ID CHEMBL3577362
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Lipids and lipid-like mol
      • Class: Prenol lipids
        • Subclass: Sesquiterpenoids
          • Direct Parent: Sesquiterpenoids

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 282.33 ALogp: 2.4
HBD: 4 HBA: 5
Rotatable Bonds: 6 Lipinski's rule of five: Accepted
Polar Surface Area: 98.0 Aromatic Rings: 1
Heavy Atoms: 20 QED Weighted: 0.643

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -5.026 MDCK Permeability: 0.00000675
Pgp-inhibitor: 0.002 Pgp-substrate: 0.084
Human Intestinal Absorption (HIA): 0.012 20% Bioavailability (F20%): 0.003
30% Bioavailability (F30%): 0.119

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.14 Plasma Protein Binding (PPB): 39.76%
Volume Distribution (VD): 0.387 Fu: 51.88%

ADMET: Metabolism

CYP1A2-inhibitor: 0.033 CYP1A2-substrate: 0.455
CYP2C19-inhibitor: 0.019 CYP2C19-substrate: 0.057
CYP2C9-inhibitor: 0.038 CYP2C9-substrate: 0.128
CYP2D6-inhibitor: 0.007 CYP2D6-substrate: 0.117
CYP3A4-inhibitor: 0.048 CYP3A4-substrate: 0.115

ADMET: Excretion

Clearance (CL): 8.397 Half-life (T1/2): 0.847

ADMET: Toxicity

hERG Blockers: 0.037 Human Hepatotoxicity (H-HT): 0.279
Drug-inuced Liver Injury (DILI): 0.778 AMES Toxicity: 0.011
Rat Oral Acute Toxicity: 0.022 Maximum Recommended Daily Dose: 0.029
Skin Sensitization: 0.051 Carcinogencity: 0.015
Eye Corrosion: 0.004 Eye Irritation: 0.325
Respiratory Toxicity: 0.031
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002564 0.729 D0I3RO 0.319
ENC004442 0.667 D0BA6T 0.319
ENC005624 0.667 D0I8FI 0.314
ENC002383 0.625 D08HUC 0.311
ENC002565 0.625 D02ZJI 0.311
ENC002688 0.594 D0K5CB 0.311
ENC002474 0.493 D0P7JZ 0.306
ENC003717 0.478 D08HVR 0.290
ENC005625 0.457 D0Y6KO 0.289
ENC004195 0.431 D0C4YC 0.286
*Note: the compound similarity was calculated by RDKIT.