NPs Basic Information

Name
2-Hydroxy-4-methylpyrimidine
Molecular Formula C5H6N2O
IUPAC Name*
6-methyl-1H-pyrimidin-2-one
SMILES
CC1=CC=NC(=O)N1
InChI
InChI=1S/C5H6N2O/c1-4-2-3-6-5(8)7-4/h2-3H,1H3,(H,6,7,8)
InChIKey
AHHHDTLXONDKQF-UHFFFAOYSA-N
Synonyms
4-methylpyrimidin-2-ol; 2-Hydroxy-4-methylpyrimidine; 15231-48-8; 4-methyl-1,2-dihydropyrimidin-2-one; 4-METHYLPYRIMIDIN-2(1H)-ONE; 6-methyl-1H-pyrimidin-2-one; 4-methyl-2-pyrimidinol; 4-Methyl-2(1H)-pyrimidinone; 6-Methylpyrimidin-2(1H)-one; 15231-67-1; 2(1H)-Pyrimidinone, 4-methyl-; 4-methylpyrimid-2-one; 6-Methyl-2-pyrimidone; 6-methyl-2-pyrimidinone; 2PYRIMIDONE4METHYL; 4-Methyl-pyrimidin-2-ol; hydroxy-6-methylpyrimidine; 2-Pyrimidinol, 4-methyl-; 4-Methylpyrimidin-2-ol HCl; 4-Methyl-2-hydroxypyrimidine; SCHEMBL501750; 4-Methyl-5H-pyrimidin-2-one; 2(1H)-Pyrimidinone,4-methyl-; 4-METHYLPYRIMIDIN-2-ONE; SCHEMBL10325788; AHHHDTLXONDKQF-UHFFFAOYSA-; DTXSID70878778; 4-Methyl-2-oxo-(1H)-pyrimidine; ACT08959; ALBB-016443; NSC 1588; EINECS 226-306-6; MFCD00044500; MFCD09991726; ZINC18084478; AKOS002337540; AKOS006230604; PB19074; 2-pyrimidinol, 4-methyl-, hydrochloride; AM803253; AS-50692; SY073173; 4-methyl-3H-pyrimidin-2-one Hydrochloride; DB-081949; CS-0037723; FT-0648931; EN300-66580; P10883; W10295; AC-907/30003036; W-201357; Z1065584884
CAS 5348-51-6
PubChem CID 407091
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Diazines
        • Subclass: Pyrimidines and pyrimidin
          • Direct Parent: Pyrimidones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 110.11 ALogp: -1.4
HBD: 1 HBA: 1
Rotatable Bonds: 0 Lipinski's rule of five: Accepted
Polar Surface Area: 41.5 Aromatic Rings: 1
Heavy Atoms: 8 QED Weighted: 0.528

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.466 MDCK Permeability: 0.00001850
Pgp-inhibitor: 0 Pgp-substrate: 0.016
Human Intestinal Absorption (HIA): 0.013 20% Bioavailability (F20%): 0.003
30% Bioavailability (F30%): 0.003

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.604 Plasma Protein Binding (PPB): 33.03%
Volume Distribution (VD): 0.839 Fu: 68.06%

ADMET: Metabolism

CYP1A2-inhibitor: 0.034 CYP1A2-substrate: 0.906
CYP2C19-inhibitor: 0.046 CYP2C19-substrate: 0.061
CYP2C9-inhibitor: 0.008 CYP2C9-substrate: 0.243
CYP2D6-inhibitor: 0.015 CYP2D6-substrate: 0.155
CYP3A4-inhibitor: 0.006 CYP3A4-substrate: 0.18

ADMET: Excretion

Clearance (CL): 7.341 Half-life (T1/2): 0.826

ADMET: Toxicity

hERG Blockers: 0.016 Human Hepatotoxicity (H-HT): 0.709
Drug-inuced Liver Injury (DILI): 0.949 AMES Toxicity: 0.02
Rat Oral Acute Toxicity: 0.121 Maximum Recommended Daily Dose: 0.026
Skin Sensitization: 0.408 Carcinogencity: 0.782
Eye Corrosion: 0.022 Eye Irritation: 0.959
Respiratory Toxicity: 0.052
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000721 0.308 D0S5WG 0.314
ENC000440 0.258 D0Y9ZE 0.241
ENC000065 0.257 D0P0HB 0.238
ENC000178 0.244 D0N0OU 0.231
ENC003235 0.244 D03ZBN 0.226
ENC000063 0.243 D0L7UQ 0.222
ENC000292 0.243 D02NJA 0.219
ENC000577 0.237 D0O2EM 0.215
ENC005053 0.236 D04KYY 0.214
ENC001342 0.225 D0S1NZ 0.214
*Note: the compound similarity was calculated by RDKIT.