NPs Basic Information

Name
Pentane-2,3-diol
Molecular Formula C5H12O2
IUPAC Name*
pentane-2,3-diol
SMILES
CCC(C(C)O)O
InChI
InChI=1S/C5H12O2/c1-3-5(7)4(2)6/h4-7H,3H2,1-2H3
InChIKey
XLMFDCKSFJWJTP-UHFFFAOYSA-N
Synonyms
Pentane-2,3-diol; 2,3-Pentanediol; 42027-23-6; EINECS 255-632-1; SCHEMBL37839; DTXSID20871390; MFCD00474530; AKOS022504354; AS-56713; CS-0243433; D93064; EN300-263649; Z1251352132
CAS 42027-23-6
PubChem CID 123505
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organic oxygen compounds
      • Class: Organooxygen compounds
        • Subclass: Alcohols and polyols
          • Direct Parent: 1,2-diols

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 104.15 ALogp: 0.3
HBD: 2 HBA: 2
Rotatable Bonds: 2 Lipinski's rule of five: Accepted
Polar Surface Area: 40.5 Aromatic Rings: 0
Heavy Atoms: 7 QED Weighted: 0.536

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.49 MDCK Permeability: 0.00026069
Pgp-inhibitor: 0 Pgp-substrate: 0.031
Human Intestinal Absorption (HIA): 0.015 20% Bioavailability (F20%): 0.005
30% Bioavailability (F30%): 0.008

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.341 Plasma Protein Binding (PPB): 10.15%
Volume Distribution (VD): 1.121 Fu: 74.97%

ADMET: Metabolism

CYP1A2-inhibitor: 0.047 CYP1A2-substrate: 0.452
CYP2C19-inhibitor: 0.017 CYP2C19-substrate: 0.745
CYP2C9-inhibitor: 0.003 CYP2C9-substrate: 0.642
CYP2D6-inhibitor: 0.004 CYP2D6-substrate: 0.376
CYP3A4-inhibitor: 0.003 CYP3A4-substrate: 0.183

ADMET: Excretion

Clearance (CL): 7.577 Half-life (T1/2): 0.758

ADMET: Toxicity

hERG Blockers: 0.019 Human Hepatotoxicity (H-HT): 0.026
Drug-inuced Liver Injury (DILI): 0.047 AMES Toxicity: 0.033
Rat Oral Acute Toxicity: 0.041 Maximum Recommended Daily Dose: 0.012
Skin Sensitization: 0.067 Carcinogencity: 0.031
Eye Corrosion: 0.014 Eye Irritation: 0.814
Respiratory Toxicity: 0.047
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000016 0.500 D08QGD 0.240
ENC001011 0.500 D0ZK8H 0.233
ENC000889 0.364 D08HUC 0.216
ENC005106 0.342 D04YPN 0.213
ENC000057 0.333 D00AMQ 0.211
ENC000307 0.333 D09MXS 0.205
ENC001474 0.333 D06HZY 0.205
ENC000289 0.308 D0P7EK 0.205
ENC000141 0.300 D08QME 0.196
ENC000396 0.296 D00ZOF 0.192
*Note: the compound similarity was calculated by RDKIT.