NPs Basic Information

Name
Cylindrocarpyridone B
Molecular Formula C14H21NO5
IUPAC Name*
1-(2-hydroxyethyl)-6-[3-(hydroxymethyl)pentyl]-4-oxopyridine-3-carboxylic acid
SMILES
CCC(CCC1=CC(=O)C(=CN1CCO)C(=O)O)CO
InChI
InChI=1S/C14H21NO5/c1-2-10(9-17)3-4-11-7-13(18)12(14(19)20)8-15(11)5-6-16/h7-8,10,16-17H,2-6,9H2,1H3,(H,19,20)
InChIKey
LKAZINBTZKNQAN-UHFFFAOYSA-N
Synonyms
Cylindrocarpyridone B
CAS NA
PubChem CID 146684365
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Pyridines and derivatives
        • Subclass: Pyridinecarboxylic acids
          • Direct Parent: Pyridinecarboxylic acids

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 283.32 ALogp: 1.0
HBD: 3 HBA: 6
Rotatable Bonds: 8 Lipinski's rule of five: Accepted
Polar Surface Area: 98.1 Aromatic Rings: 1
Heavy Atoms: 20 QED Weighted: 0.658

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -5.362 MDCK Permeability: 0.00003030
Pgp-inhibitor: 0.004 Pgp-substrate: 0.158
Human Intestinal Absorption (HIA): 0.949 20% Bioavailability (F20%): 0.045
30% Bioavailability (F30%): 0.78

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.58 Plasma Protein Binding (PPB): 16.48%
Volume Distribution (VD): 0.428 Fu: 70.82%

ADMET: Metabolism

CYP1A2-inhibitor: 0.03 CYP1A2-substrate: 0.076
CYP2C19-inhibitor: 0.027 CYP2C19-substrate: 0.055
CYP2C9-inhibitor: 0.007 CYP2C9-substrate: 0.101
CYP2D6-inhibitor: 0.009 CYP2D6-substrate: 0.128
CYP3A4-inhibitor: 0.021 CYP3A4-substrate: 0.066

ADMET: Excretion

Clearance (CL): 3.162 Half-life (T1/2): 0.738

ADMET: Toxicity

hERG Blockers: 0.045 Human Hepatotoxicity (H-HT): 0.629
Drug-inuced Liver Injury (DILI): 0.945 AMES Toxicity: 0.022
Rat Oral Acute Toxicity: 0.007 Maximum Recommended Daily Dose: 0.029
Skin Sensitization: 0.096 Carcinogencity: 0.048
Eye Corrosion: 0.003 Eye Irritation: 0.098
Respiratory Toxicity: 0.041
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000544 0.298 D07JGT 0.282
ENC004194 0.296 D0A5CM 0.271
ENC002730 0.284 D07BYK 0.268
ENC004196 0.280 D07CPU 0.247
ENC004195 0.280 D0Q2PE 0.242
ENC000220 0.279 D0R8ER 0.242
ENC001899 0.279 D06GAM 0.238
ENC005624 0.274 D04NXQ 0.237
ENC004442 0.274 D02KOF 0.232
ENC004668 0.261 D0QD1G 0.221
*Note: the compound similarity was calculated by RDKIT.