NPs Basic Information

Name
Cubitene
Molecular Formula C20H32
IUPAC Name*
(1Z,5Z,8S,10R)-1,5-dimethyl-8,10-bis(prop-1-en-2-yl)cyclododeca-1,5-diene
SMILES
C/C/1=C/CC/C(=C\C[C@@H](C[C@@H](CC1)C(=C)C)C(=C)C)/C
InChI
InChI=1S/C20H32/c1-15(2)19-12-10-17(5)8-7-9-18(6)11-13-20(14-19)16(3)4/h8,11,19-20H,1,3,7,9-10,12-14H2,2,4-6H3/b17-8-,18-11-/t19-,20+/m1/s1
InChIKey
CIJBIDDWTJGAAD-SPRGCWLUSA-N
Synonyms
Cubitene; (1e,5e,8s,10r)-1,5-dimethyl-8,10-di(prop-1-en-2-yl)cyclododeca-1,5-diene; 66723-19-1
CAS NA
PubChem CID 101316901
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Lipids and lipid-like mol
      • Class: Prenol lipids
        • Subclass: Sesquiterpenoids
          • Direct Parent: Sesquiterpenoids

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 272.5 ALogp: 6.7
HBD: 0 HBA: 0
Rotatable Bonds: 2 Lipinski's rule of five: Rejected
Polar Surface Area: 0.0 Aromatic Rings: 1
Heavy Atoms: 20 QED Weighted: 0.499

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.683 MDCK Permeability: 0.00001630
Pgp-inhibitor: 0.997 Pgp-substrate: 0.001
Human Intestinal Absorption (HIA): 0.032 20% Bioavailability (F20%): 0.982
30% Bioavailability (F30%): 0.163

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.071 Plasma Protein Binding (PPB): 98.09%
Volume Distribution (VD): 2.571 Fu: 1.40%

ADMET: Metabolism

CYP1A2-inhibitor: 0.232 CYP1A2-substrate: 0.651
CYP2C19-inhibitor: 0.289 CYP2C19-substrate: 0.844
CYP2C9-inhibitor: 0.202 CYP2C9-substrate: 0.839
CYP2D6-inhibitor: 0.146 CYP2D6-substrate: 0.931
CYP3A4-inhibitor: 0.473 CYP3A4-substrate: 0.3

ADMET: Excretion

Clearance (CL): 3.875 Half-life (T1/2): 0.685

ADMET: Toxicity

hERG Blockers: 0.03 Human Hepatotoxicity (H-HT): 0.167
Drug-inuced Liver Injury (DILI): 0.026 AMES Toxicity: 0.005
Rat Oral Acute Toxicity: 0.003 Maximum Recommended Daily Dose: 0.766
Skin Sensitization: 0.864 Carcinogencity: 0.136
Eye Corrosion: 0.942 Eye Irritation: 0.984
Respiratory Toxicity: 0.034
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000555 0.473 D0V2JK 0.219
ENC001066 0.473 D0O1UZ 0.219
ENC002652 0.418 D04GJN 0.208
ENC003731 0.409 D02CNR 0.202
ENC003782 0.409 D0I2SD 0.196
ENC003655 0.409 D04SFH 0.196
ENC003799 0.409 D07BSQ 0.192
ENC003698 0.402 D0F1UL 0.192
ENC001981 0.397 D02CJX 0.183
ENC003463 0.380 D0WO8W 0.182
*Note: the compound similarity was calculated by RDKIT.