NPs Basic Information

Name
4-(Hydroxymethyl)-5-hydroxy-2h-pyran-2-one
Molecular Formula C6H6O4
IUPAC Name*
5-hydroxy-4-(hydroxymethyl)pyran-2-one
SMILES
C1=C(C(=COC1=O)O)CO
InChI
InChI=1S/C6H6O4/c7-2-4-1-6(9)10-3-5(4)8/h1,3,7-8H,2H2
InChIKey
YHVOEGJCPPEQKG-UHFFFAOYSA-N
Synonyms
4-(hydroxymethyl)-5-hydroxy-2h-pyran-2-one; CHEMBL4525476
CAS NA
PubChem CID 24864462
ChEMBL ID CHEMBL4525476
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Pyrans
        • Subclass: Pyranones and derivatives
          • Direct Parent: Pyranones and derivatives

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 142.11 ALogp: -0.6
HBD: 2 HBA: 4
Rotatable Bonds: 1 Lipinski's rule of five: Accepted
Polar Surface Area: 66.8 Aromatic Rings: 1
Heavy Atoms: 10 QED Weighted: 0.589

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.695 MDCK Permeability: 0.00017181
Pgp-inhibitor: 0 Pgp-substrate: 0.872
Human Intestinal Absorption (HIA): 0.011 20% Bioavailability (F20%): 0.502
30% Bioavailability (F30%): 0.992

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.09 Plasma Protein Binding (PPB): 49.13%
Volume Distribution (VD): 0.678 Fu: 68.33%

ADMET: Metabolism

CYP1A2-inhibitor: 0.241 CYP1A2-substrate: 0.238
CYP2C19-inhibitor: 0.032 CYP2C19-substrate: 0.056
CYP2C9-inhibitor: 0.006 CYP2C9-substrate: 0.342
CYP2D6-inhibitor: 0.018 CYP2D6-substrate: 0.444
CYP3A4-inhibitor: 0.006 CYP3A4-substrate: 0.125

ADMET: Excretion

Clearance (CL): 10.999 Half-life (T1/2): 0.923

ADMET: Toxicity

hERG Blockers: 0.074 Human Hepatotoxicity (H-HT): 0.104
Drug-inuced Liver Injury (DILI): 0.336 AMES Toxicity: 0.02
Rat Oral Acute Toxicity: 0.189 Maximum Recommended Daily Dose: 0.018
Skin Sensitization: 0.599 Carcinogencity: 0.802
Eye Corrosion: 0.232 Eye Irritation: 0.977
Respiratory Toxicity: 0.206
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC004766 0.550 D02ZJI 0.286
ENC000101 0.543 D0K5CB 0.286
ENC000985 0.421 D07MUN 0.250
ENC002875 0.366 D01WJL 0.244
ENC006095 0.357 D0C4YC 0.244
ENC002334 0.350 D0T7OW 0.239
ENC006096 0.348 D07AHW 0.234
ENC003984 0.346 D08HVR 0.231
ENC003983 0.346 D07MOX 0.229
ENC003365 0.333 D0BA6T 0.222
*Note: the compound similarity was calculated by RDKIT.