NPs Basic Information

Name
cis-3-Tridecene
Molecular Formula C13H26
IUPAC Name*
(Z)-tridec-3-ene
SMILES
CCCCCCCCC/C=C\CC
InChI
InChI=1S/C13H26/c1-3-5-7-9-11-13-12-10-8-6-4-2/h5,7H,3-4,6,8-13H2,1-2H3/b7-5-
InChIKey
OMBXNSHDJUALCV-ALCCZGGFSA-N
Synonyms
cis-3-Tridecene; 3-Tridecene, (Z)-; 3-Tridecene, (Z); 3-Tridecene, (3Z)-; (Z)-3-Tridecene; (3Z)-3-Tridecene; 7RY0E2S0NR; 41446-53-1; UNII-7RY0E2S0NR; .GAMMA.-CIS-TRIDECENE; DTXSID40880767; Q27268770
CAS 41446-53-1
PubChem CID 5362711
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Hydrocarbons
      • Class: Unsaturated hydrocarbons
        • Subclass: Unsaturated aliphatic hyd
          • Direct Parent: Unsaturated aliphatic hyd

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 182.35 ALogp: 6.3
HBD: 0 HBA: 0
Rotatable Bonds: 9 Lipinski's rule of five: Rejected
Polar Surface Area: 0.0 Aromatic Rings: 0
Heavy Atoms: 13 QED Weighted: 0.33

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.664 MDCK Permeability: 0.00001860
Pgp-inhibitor: 0 Pgp-substrate: 0.001
Human Intestinal Absorption (HIA): 0.008 20% Bioavailability (F20%): 0.842
30% Bioavailability (F30%): 0.993

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.765 Plasma Protein Binding (PPB): 97.80%
Volume Distribution (VD): 4.021 Fu: 2.13%

ADMET: Metabolism

CYP1A2-inhibitor: 0.807 CYP1A2-substrate: 0.513
CYP2C19-inhibitor: 0.545 CYP2C19-substrate: 0.306
CYP2C9-inhibitor: 0.305 CYP2C9-substrate: 0.932
CYP2D6-inhibitor: 0.36 CYP2D6-substrate: 0.666
CYP3A4-inhibitor: 0.346 CYP3A4-substrate: 0.112

ADMET: Excretion

Clearance (CL): 4.91 Half-life (T1/2): 0.734

ADMET: Toxicity

hERG Blockers: 0.194 Human Hepatotoxicity (H-HT): 0.029
Drug-inuced Liver Injury (DILI): 0.04 AMES Toxicity: 0.038
Rat Oral Acute Toxicity: 0.054 Maximum Recommended Daily Dose: 0.032
Skin Sensitization: 0.938 Carcinogencity: 0.07
Eye Corrosion: 0.978 Eye Irritation: 0.991
Respiratory Toxicity: 0.609
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC001685 0.804 D0O1PH 0.451
ENC001677 0.721 D0O1TC 0.429
ENC001656 0.721 D0Z5BC 0.404
ENC001695 0.711 D05ATI 0.400
ENC001690 0.694 D0UE9X 0.382
ENC001644 0.674 D0OR6A 0.372
ENC001684 0.659 D0Z5SM 0.358
ENC001707 0.638 D0Y8DP 0.345
ENC000493 0.625 D03ZJE 0.333
ENC000455 0.619 D09SRR 0.333
*Note: the compound similarity was calculated by RDKIT.