NPs Basic Information

Name
3-(1,3-Dihydroxyisopropyl)-1,5,8,11-tetraoxacyclotridecane
Molecular Formula C12H24O6
IUPAC Name*
2-(1,4,7,10-tetraoxacyclotridec-12-yl)propane-1,3-diol
SMILES
C1COCCOCC(COCCO1)C(CO)CO
InChI
InChI=1S/C12H24O6/c13-7-11(8-14)12-9-17-5-3-15-1-2-16-4-6-18-10-12/h11-14H,1-10H2
InChIKey
SHKJIVKMNOFKLO-UHFFFAOYSA-N
Synonyms
2-(1,4,7,10-Tetraoxacyclotridecan-12-yl)-1,3-propanediol #; 3-(1,3-Dihydroxyisopropyl)-1,5,8,11-tetraoxacyclotridecane
CAS NA
PubChem CID 560734
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organic oxygen compounds
      • Class: Organooxygen compounds
        • Subclass: Ethers
          • Direct Parent: Dialkyl ethers

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 264.31 ALogp: -1.4
HBD: 2 HBA: 6
Rotatable Bonds: 3 Lipinski's rule of five: Accepted
Polar Surface Area: 77.4 Aromatic Rings: 1
Heavy Atoms: 18 QED Weighted: 0.732

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -5.009 MDCK Permeability: 0.00003290
Pgp-inhibitor: 0.002 Pgp-substrate: 0.006
Human Intestinal Absorption (HIA): 0.323 20% Bioavailability (F20%): 0.909
30% Bioavailability (F30%): 0.759

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.089 Plasma Protein Binding (PPB): 13.97%
Volume Distribution (VD): 0.574 Fu: 70.68%

ADMET: Metabolism

CYP1A2-inhibitor: 0.004 CYP1A2-substrate: 0.06
CYP2C19-inhibitor: 0.008 CYP2C19-substrate: 0.061
CYP2C9-inhibitor: 0.001 CYP2C9-substrate: 0.004
CYP2D6-inhibitor: 0.002 CYP2D6-substrate: 0.06
CYP3A4-inhibitor: 0.007 CYP3A4-substrate: 0.141

ADMET: Excretion

Clearance (CL): 2.243 Half-life (T1/2): 0.621

ADMET: Toxicity

hERG Blockers: 0.732 Human Hepatotoxicity (H-HT): 0.122
Drug-inuced Liver Injury (DILI): 0.002 AMES Toxicity: 0.069
Rat Oral Acute Toxicity: 0.056 Maximum Recommended Daily Dose: 0.004
Skin Sensitization: 0.907 Carcinogencity: 0.34
Eye Corrosion: 0.021 Eye Irritation: 0.986
Respiratory Toxicity: 0.005
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000927 0.183 D09TPF 0.147
ENC000928 0.183 D0U3CR 0.147
ENC001488 0.175 D0P1IZ 0.142
ENC001003 0.165 D00EQL 0.139
ENC004715 0.165 D05UVD 0.133
ENC001028 0.159 D01JQJ 0.129
ENC000040 0.155 D04ZTY 0.125
ENC003624 0.153 D0P7EK 0.123
ENC000244 0.143 D09MXS 0.123
ENC001185 0.141 D0X5WJ 0.122
*Note: the compound similarity was calculated by RDKIT.