NPs Basic Information

Name
Cyclotridecane
Molecular Formula C13H26
IUPAC Name*
cyclotridecane
SMILES
C1CCCCCCCCCCCC1
InChI
InChI=1S/C13H26/c1-2-4-6-8-10-12-13-11-9-7-5-3-1/h1-13H2
InChIKey
UEVXKGPJXXDGCX-UHFFFAOYSA-N
Synonyms
Cyclotridecane; 295-02-3; DTXSID50183695; ZINC90755240; AKOS006274360; FT-0693191; Q7485801
CAS 295-02-3
PubChem CID 136145
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Hydrocarbons
      • Class: Saturated hydrocarbons
        • Subclass: Cycloalkanes
          • Direct Parent: Cycloalkanes

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 182.35 ALogp: 7.2
HBD: 0 HBA: 0
Rotatable Bonds: 0 Lipinski's rule of five: Rejected
Polar Surface Area: 0.0 Aromatic Rings: 1
Heavy Atoms: 13 QED Weighted: 0.47

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.821 MDCK Permeability: 0.00001470
Pgp-inhibitor: 0.001 Pgp-substrate: 0
Human Intestinal Absorption (HIA): 0.003 20% Bioavailability (F20%): 0.243
30% Bioavailability (F30%): 0.994

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.34 Plasma Protein Binding (PPB): 97.55%
Volume Distribution (VD): 3.389 Fu: 1.57%

ADMET: Metabolism

CYP1A2-inhibitor: 0.564 CYP1A2-substrate: 0.197
CYP2C19-inhibitor: 0.451 CYP2C19-substrate: 0.064
CYP2C9-inhibitor: 0.125 CYP2C9-substrate: 0.943
CYP2D6-inhibitor: 0.141 CYP2D6-substrate: 0.1
CYP3A4-inhibitor: 0.151 CYP3A4-substrate: 0.052

ADMET: Excretion

Clearance (CL): 3.929 Half-life (T1/2): 0.102

ADMET: Toxicity

hERG Blockers: 0.187 Human Hepatotoxicity (H-HT): 0.02
Drug-inuced Liver Injury (DILI): 0.379 AMES Toxicity: 0.027
Rat Oral Acute Toxicity: 0.041 Maximum Recommended Daily Dose: 0.044
Skin Sensitization: 0.958 Carcinogencity: 0.067
Eye Corrosion: 0.993 Eye Irritation: 0.965
Respiratory Toxicity: 0.853
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000324 0.923 D00SBN 0.303
ENC000323 0.769 D08VSI 0.244
ENC000840 0.686 D0S5NG 0.236
ENC001146 0.650 D0N3PE 0.234
ENC001017 0.648 D07XJM 0.214
ENC001147 0.542 D09GFL 0.209
ENC000251 0.462 D0L0MK 0.200
ENC001230 0.364 D02LRQ 0.174
ENC000170 0.316 D0R1WR 0.174
ENC005710 0.264 D0U3CR 0.174
*Note: the compound similarity was calculated by RDKIT.