NPs Basic Information

Name
kipukasins P
Molecular Formula C18H20N2O8
IUPAC Name*
[2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl]2-hydroxy-4,6-dimethylbenzoate
SMILES
Cc1cc(C)c(C(=O)OC2C(O)C(CO)OC2n2ccc(=O)[nH]c2=O)c(O)c1
InChI
InChI=1S/C18H20N2O8/c1-8-5-9(2)13(10(22)6-8)17(25)28-15-14(24)11(7-21)27-16(15)20-4-3-12(23)19-18(20)26/h3-6,11,14-16,21-22,24H,7H2,1-2H3,(H,19,23,26)/t11-,14-,15-,16-/m1/s1
InChIKey
PFSBARRSZWZELF-RAEVTNRLSA-N
Synonyms
NA
CAS NA
PubChem CID NA
ChEMBL ID NA
*Note: the IUPAC Name was calculated by STOUT. Reference: PMID:33906675.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Nucleosides, nucleotides,
      • Class: Pyrimidine nucleosides
        • Subclass: No Rank at Level Subclass
          • Direct Parent: Pyrimidine nucleosides

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 392.36 ALogp: -0.7
HBD: 4 HBA: 9
Rotatable Bonds: 4 Lipinski's rule of five: Accepted
Polar Surface Area: 151.1 Aromatic Rings: 3
Heavy Atoms: 28 QED Weighted: 0.522

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -6.104 MDCK Permeability: 0.00009700
Pgp-inhibitor: 0.002 Pgp-substrate: 0.276
Human Intestinal Absorption (HIA): 0.942 20% Bioavailability (F20%): 0.799
30% Bioavailability (F30%): 0.956

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.525 Plasma Protein Binding (PPB): 54.68%
Volume Distribution (VD): 0.375 Fu: 42.83%

ADMET: Metabolism

CYP1A2-inhibitor: 0.044 CYP1A2-substrate: 0.143
CYP2C19-inhibitor: 0.034 CYP2C19-substrate: 0.056
CYP2C9-inhibitor: 0.006 CYP2C9-substrate: 0.141
CYP2D6-inhibitor: 0.015 CYP2D6-substrate: 0.12
CYP3A4-inhibitor: 0.034 CYP3A4-substrate: 0.186

ADMET: Excretion

Clearance (CL): 11.33 Half-life (T1/2): 0.785

ADMET: Toxicity

hERG Blockers: 0.008 Human Hepatotoxicity (H-HT): 0.297
Drug-inuced Liver Injury (DILI): 0.986 AMES Toxicity: 0.025
Rat Oral Acute Toxicity: 0.026 Maximum Recommended Daily Dose: 0.013
Skin Sensitization: 0.052 Carcinogencity: 0.042
Eye Corrosion: 0.003 Eye Irritation: 0.008
Respiratory Toxicity: 0.027
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC005638 0.767 D0Y7DP 0.506
ENC002576 0.703 D0OL7F 0.390
ENC002632 0.537 D03TGJ 0.340
ENC000126 0.506 D07XSN 0.326
ENC002972 0.384 D0CL9S 0.326
ENC005169 0.375 D0R2KF 0.296
ENC003952 0.364 D0G5AG 0.292
ENC003813 0.350 D0Z8EX 0.290
ENC002973 0.350 D0D4YZ 0.289
ENC003748 0.347 D0TS1Z 0.284
*Note: the compound similarity was calculated by RDKIT.