NPs Basic Information

Name
Photipyrone B
Molecular Formula C11H18O5
IUPAC Name*
(2S)-2-[(1S)-1,3-dihydroxypentyl]-4-methoxy-2,3-dihydropyran-6-one
SMILES
CCC(C[C@@H]([C@@H]1CC(=CC(=O)O1)OC)O)O
InChI
InChI=1S/C11H18O5/c1-3-7(12)4-9(13)10-5-8(15-2)6-11(14)16-10/h6-7,9-10,12-13H,3-5H2,1-2H3/t7?,9-,10-/m0/s1
InChIKey
QPHDBTAGXJAYBS-IVNRZZHDSA-N
Synonyms
Photipyrone B
CAS NA
PubChem CID 59052169
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Pyrans
        • Subclass: Pyranones and derivatives
          • Direct Parent: Dihydropyranones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 230.26 ALogp: 0.5
HBD: 2 HBA: 5
Rotatable Bonds: 5 Lipinski's rule of five: Accepted
Polar Surface Area: 76.0 Aromatic Rings: 1
Heavy Atoms: 16 QED Weighted: 0.682

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.722 MDCK Permeability: 0.00015685
Pgp-inhibitor: 0.005 Pgp-substrate: 0.55
Human Intestinal Absorption (HIA): 0.483 20% Bioavailability (F20%): 0.021
30% Bioavailability (F30%): 0.939

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.435 Plasma Protein Binding (PPB): 16.91%
Volume Distribution (VD): 0.639 Fu: 67.95%

ADMET: Metabolism

CYP1A2-inhibitor: 0.021 CYP1A2-substrate: 0.12
CYP2C19-inhibitor: 0.019 CYP2C19-substrate: 0.807
CYP2C9-inhibitor: 0.007 CYP2C9-substrate: 0.094
CYP2D6-inhibitor: 0.004 CYP2D6-substrate: 0.197
CYP3A4-inhibitor: 0.016 CYP3A4-substrate: 0.389

ADMET: Excretion

Clearance (CL): 10.212 Half-life (T1/2): 0.889

ADMET: Toxicity

hERG Blockers: 0.026 Human Hepatotoxicity (H-HT): 0.569
Drug-inuced Liver Injury (DILI): 0.066 AMES Toxicity: 0.038
Rat Oral Acute Toxicity: 0.097 Maximum Recommended Daily Dose: 0.943
Skin Sensitization: 0.959 Carcinogencity: 0.51
Eye Corrosion: 0.394 Eye Irritation: 0.846
Respiratory Toxicity: 0.706
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC005858 0.654 D0L1WV 0.296
ENC005201 0.654 D07AHW 0.213
ENC005857 0.647 D09SSC 0.202
ENC000980 0.647 D02RQU 0.192
ENC002838 0.460 D0CT4D 0.186
ENC005200 0.460 D0ZI4H 0.184
ENC005860 0.410 D0FN7J 0.184
ENC005577 0.360 D05SHK 0.184
ENC004612 0.316 D06WTZ 0.183
ENC004611 0.316 D02PWM 0.182
*Note: the compound similarity was calculated by RDKIT.