NPs Basic Information

Name
Cyclonerodiol oxide
Molecular Formula C15H28O3
IUPAC Name*
(1R,2S,3R)-3-[(2R,5S)-5-(2-hydroxypropan-2-yl)-2-methyloxolan-2-yl]-1,2-dimethylcyclopentan-1-ol
SMILES
C[C@H]1[C@@H](CC[C@@]1(C)O)[C@]2(CC[C@H](O2)C(C)(C)O)C
InChI
InChI=1S/C15H28O3/c1-10-11(6-8-14(10,4)17)15(5)9-7-12(18-15)13(2,3)16/h10-12,16-17H,6-9H2,1-5H3/t10-,11+,12-,14+,15+/m0/s1
InChIKey
CTTSYRDQSMAGNT-SZWZKDINSA-N
Synonyms
Cyclonerodiol oxide
CAS NA
PubChem CID 54753974
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Lipids and lipid-like mol
      • Class: Prenol lipids
        • Subclass: Terpene glycosides
          • Direct Parent: Terpene glycosides

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 256.38 ALogp: 1.9
HBD: 2 HBA: 3
Rotatable Bonds: 2 Lipinski's rule of five: Accepted
Polar Surface Area: 49.7 Aromatic Rings: 2
Heavy Atoms: 18 QED Weighted: 0.797

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.42 MDCK Permeability: 0.00002000
Pgp-inhibitor: 0.184 Pgp-substrate: 0.002
Human Intestinal Absorption (HIA): 0.005 20% Bioavailability (F20%): 0.107
30% Bioavailability (F30%): 0.052

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.205 Plasma Protein Binding (PPB): 77.57%
Volume Distribution (VD): 1.227 Fu: 21.57%

ADMET: Metabolism

CYP1A2-inhibitor: 0.026 CYP1A2-substrate: 0.304
CYP2C19-inhibitor: 0.021 CYP2C19-substrate: 0.897
CYP2C9-inhibitor: 0.039 CYP2C9-substrate: 0.155
CYP2D6-inhibitor: 0.006 CYP2D6-substrate: 0.294
CYP3A4-inhibitor: 0.034 CYP3A4-substrate: 0.262

ADMET: Excretion

Clearance (CL): 6.364 Half-life (T1/2): 0.434

ADMET: Toxicity

hERG Blockers: 0.041 Human Hepatotoxicity (H-HT): 0.15
Drug-inuced Liver Injury (DILI): 0.214 AMES Toxicity: 0.022
Rat Oral Acute Toxicity: 0.026 Maximum Recommended Daily Dose: 0.024
Skin Sensitization: 0.334 Carcinogencity: 0.197
Eye Corrosion: 0.919 Eye Irritation: 0.926
Respiratory Toxicity: 0.418
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002289 1.000 D07QKN 0.386
ENC005088 0.500 D0N6FH 0.272
ENC000860 0.476 D0U3GL 0.271
ENC003627 0.397 D0I2SD 0.264
ENC002222 0.385 D0L2LS 0.258
ENC005497 0.373 D0S3WH 0.256
ENC005066 0.373 D0Z1XD 0.256
ENC004079 0.368 D0Q6NZ 0.256
ENC004067 0.368 D0Y5ZA 0.253
ENC003088 0.364 D03XOC 0.253
*Note: the compound similarity was calculated by RDKIT.