NPs Basic Information

Name
Xylaropyrone
Molecular Formula C12H18O3
IUPAC Name*
5-(hydroxymethyl)-2-[(3R)-3-methylpentyl]pyran-4-one
SMILES
CC[C@@H](C)CCC1=CC(=O)C(=CO1)CO
InChI
InChI=1S/C12H18O3/c1-3-9(2)4-5-11-6-12(14)10(7-13)8-15-11/h6,8-9,13H,3-5,7H2,1-2H3/t9-/m1/s1
InChIKey
INEAKDRHDBRKJD-SECBINFHSA-N
Synonyms
Xylaropyrone
CAS NA
PubChem CID 51350338
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Pyrans
        • Subclass: Pyranones and derivatives
          • Direct Parent: Pyranones and derivatives

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 210.27 ALogp: 2.3
HBD: 1 HBA: 3
Rotatable Bonds: 5 Lipinski's rule of five: Accepted
Polar Surface Area: 46.5 Aromatic Rings: 1
Heavy Atoms: 15 QED Weighted: 0.813

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.474 MDCK Permeability: 0.00001800
Pgp-inhibitor: 0.002 Pgp-substrate: 0.686
Human Intestinal Absorption (HIA): 0.006 20% Bioavailability (F20%): 0.006
30% Bioavailability (F30%): 0.167

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.888 Plasma Protein Binding (PPB): 91.87%
Volume Distribution (VD): 1.085 Fu: 12.65%

ADMET: Metabolism

CYP1A2-inhibitor: 0.71 CYP1A2-substrate: 0.932
CYP2C19-inhibitor: 0.543 CYP2C19-substrate: 0.186
CYP2C9-inhibitor: 0.299 CYP2C9-substrate: 0.437
CYP2D6-inhibitor: 0.113 CYP2D6-substrate: 0.678
CYP3A4-inhibitor: 0.042 CYP3A4-substrate: 0.267

ADMET: Excretion

Clearance (CL): 7.212 Half-life (T1/2): 0.854

ADMET: Toxicity

hERG Blockers: 0.015 Human Hepatotoxicity (H-HT): 0.117
Drug-inuced Liver Injury (DILI): 0.176 AMES Toxicity: 0.017
Rat Oral Acute Toxicity: 0.652 Maximum Recommended Daily Dose: 0.29
Skin Sensitization: 0.296 Carcinogencity: 0.481
Eye Corrosion: 0.011 Eye Irritation: 0.709
Respiratory Toxicity: 0.162
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC003983 0.585 D0P4MT 0.231
ENC003984 0.585 D0K5CB 0.229
ENC004199 0.473 D02ZJI 0.229
ENC005612 0.397 D0OJ4L 0.205
ENC006095 0.392 D00MIN 0.203
ENC000101 0.388 D0F0YZ 0.203
ENC005611 0.350 D0R6BR 0.203
ENC000396 0.341 D00MYT 0.203
ENC002506 0.333 D0R9EQ 0.203
ENC005637 0.318 D0K4MH 0.200
*Note: the compound similarity was calculated by RDKIT.