NPs Basic Information

Name
(1R,4R,5R,8S)-8-hydroxy-4,8-dimethyl-2-oxabicyclo[3.3.1]nonan-3-one
Molecular Formula C10H16O3
IUPAC Name*
(1R,4R,5R,8S)-8-hydroxy-4,8-dimethyl-2-oxabicyclo[3.3.1]nonan-3-one
SMILES
C[C@@H]1[C@@H]2CC[C@]([C@@H](C2)OC1=O)(C)O
InChI
InChI=1S/C10H16O3/c1-6-7-3-4-10(2,12)8(5-7)13-9(6)11/h6-8,12H,3-5H2,1-2H3/t6-,7-,8-,10+/m1/s1
InChIKey
NIVFCUNTHUULDF-DQUBFYRCSA-N
Synonyms
CHEBI:141296; (1R,4R,5R,8S)-8-hydroxy-4,8-dimethyl-2-oxabicyclo[3.3.1]nonan-3-one
CAS NA
PubChem CID 134692083
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Lactones
        • Subclass: Delta valerolactones
          • Direct Parent: Delta valerolactones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 184.23 ALogp: 1.1
HBD: 1 HBA: 3
Rotatable Bonds: 0 Lipinski's rule of five: Accepted
Polar Surface Area: 46.5 Aromatic Rings: 2
Heavy Atoms: 13 QED Weighted: 0.581

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.538 MDCK Permeability: 0.00004440
Pgp-inhibitor: 0.007 Pgp-substrate: 0.001
Human Intestinal Absorption (HIA): 0.003 20% Bioavailability (F20%): 0.004
30% Bioavailability (F30%): 0.185

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.813 Plasma Protein Binding (PPB): 45.53%
Volume Distribution (VD): 0.895 Fu: 63.07%

ADMET: Metabolism

CYP1A2-inhibitor: 0.071 CYP1A2-substrate: 0.457
CYP2C19-inhibitor: 0.045 CYP2C19-substrate: 0.787
CYP2C9-inhibitor: 0.018 CYP2C9-substrate: 0.153
CYP2D6-inhibitor: 0.005 CYP2D6-substrate: 0.167
CYP3A4-inhibitor: 0.087 CYP3A4-substrate: 0.341

ADMET: Excretion

Clearance (CL): 7.169 Half-life (T1/2): 0.606

ADMET: Toxicity

hERG Blockers: 0.027 Human Hepatotoxicity (H-HT): 0.565
Drug-inuced Liver Injury (DILI): 0.422 AMES Toxicity: 0.011
Rat Oral Acute Toxicity: 0.053 Maximum Recommended Daily Dose: 0.033
Skin Sensitization: 0.392 Carcinogencity: 0.351
Eye Corrosion: 0.419 Eye Irritation: 0.939
Respiratory Toxicity: 0.126
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC003753 0.391 D0K7LU 0.313
ENC003670 0.367 D0S3WH 0.300
ENC005088 0.364 D0G6AB 0.260
ENC003700 0.345 D0H1QY 0.255
ENC002140 0.345 D0A2AJ 0.250
ENC005798 0.345 D0U3GL 0.231
ENC002040 0.340 D04CSZ 0.231
ENC001814 0.333 D0I2SD 0.226
ENC004741 0.326 D0W3OS 0.222
ENC002880 0.313 D07QKN 0.218
*Note: the compound similarity was calculated by RDKIT.