NPs Basic Information

Name
(3R,4R,5S,6R)-4-hydroxy-3,5-dimethyl-6-[(E,3S)-3-methylpent-1-enyl]oxan-2-one
Molecular Formula C13H22O3
IUPAC Name*
(3R,4R,5S,6R)-4-hydroxy-3,5-dimethyl-6-[(E,3S)-3-methylpent-1-enyl]oxan-2-one
SMILES
CC[C@H](C)/C=C/[C@@H]1[C@H]([C@H]([C@H](C(=O)O1)C)O)C
InChI
InChI=1S/C13H22O3/c1-5-8(2)6-7-11-9(3)12(14)10(4)13(15)16-11/h6-12,14H,5H2,1-4H3/b7-6+/t8-,9+,10+,11+,12+/m0/s1
InChIKey
ILDJSXPOMKNCOL-YIEQHGPISA-N
Synonyms
LMA-P2
CAS NA
PubChem CID 101542392
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Lactones
        • Subclass: Delta valerolactones
          • Direct Parent: Delta valerolactones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 226.31 ALogp: 2.8
HBD: 1 HBA: 3
Rotatable Bonds: 3 Lipinski's rule of five: Accepted
Polar Surface Area: 46.5 Aromatic Rings: 1
Heavy Atoms: 16 QED Weighted: 0.594

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.616 MDCK Permeability: 0.00003310
Pgp-inhibitor: 0.001 Pgp-substrate: 0.019
Human Intestinal Absorption (HIA): 0.643 20% Bioavailability (F20%): 0.03
30% Bioavailability (F30%): 0.612

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.826 Plasma Protein Binding (PPB): 83.69%
Volume Distribution (VD): 1.041 Fu: 6.06%

ADMET: Metabolism

CYP1A2-inhibitor: 0.268 CYP1A2-substrate: 0.315
CYP2C19-inhibitor: 0.041 CYP2C19-substrate: 0.852
CYP2C9-inhibitor: 0.015 CYP2C9-substrate: 0.325
CYP2D6-inhibitor: 0.008 CYP2D6-substrate: 0.231
CYP3A4-inhibitor: 0.124 CYP3A4-substrate: 0.252

ADMET: Excretion

Clearance (CL): 4.87 Half-life (T1/2): 0.317

ADMET: Toxicity

hERG Blockers: 0.016 Human Hepatotoxicity (H-HT): 0.724
Drug-inuced Liver Injury (DILI): 0.648 AMES Toxicity: 0.031
Rat Oral Acute Toxicity: 0.465 Maximum Recommended Daily Dose: 0.546
Skin Sensitization: 0.105 Carcinogencity: 0.062
Eye Corrosion: 0.02 Eye Irritation: 0.045
Respiratory Toxicity: 0.585
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002880 0.489 D06WTZ 0.220
ENC004741 0.333 D0S3WH 0.210
ENC004878 0.323 D0K7LU 0.197
ENC002004 0.314 D0V0IX 0.191
ENC002532 0.295 D0ZI4H 0.186
ENC005231 0.286 D0N3NO 0.184
ENC004902 0.284 D04CSZ 0.183
ENC004876 0.281 D0H0ND 0.181
ENC004875 0.281 D0R2KF 0.177
ENC004874 0.281 D03KXY 0.176
*Note: the compound similarity was calculated by RDKIT.