NPs Basic Information

Name
variecolorin H
Molecular Formula C20H23N3O3
IUPAC Name*
(6Z)-3-methoxy-3-methyl-6-[[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methylidene]piperazine-2,5-dione
SMILES
CC1(C(=O)N/C(=C\C2=C(NC3=CC=CC=C32)C(C)(C)C=C)/C(=O)N1)OC
InChI
InChI=1S/C20H23N3O3/c1-6-19(2,3)16-13(12-9-7-8-10-14(12)21-16)11-15-17(24)23-20(4,26-5)18(25)22-15/h6-11,21H,1H2,2-5H3,(H,22,25)(H,23,24)/b15-11-
InChIKey
AULFXBHXEZPTRY-PTNGSMBKSA-N
Synonyms
variecolorin H; CHEMBL251052
CAS NA
PubChem CID 23655530
ChEMBL ID CHEMBL251052
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organic acids and derivat
      • Class: Carboxylic acids and deri
        • Subclass: Amino acids, peptides, an
          • Direct Parent: Alpha amino acids and der

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 353.4 ALogp: 3.1
HBD: 3 HBA: 3
Rotatable Bonds: 4 Lipinski's rule of five: Accepted
Polar Surface Area: 83.2 Aromatic Rings: 3
Heavy Atoms: 26 QED Weighted: 0.582

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.725 MDCK Permeability: 0.00002660
Pgp-inhibitor: 0.992 Pgp-substrate: 0.005
Human Intestinal Absorption (HIA): 0.04 20% Bioavailability (F20%): 0.005
30% Bioavailability (F30%): 0.028

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.948 Plasma Protein Binding (PPB): 90.84%
Volume Distribution (VD): 0.729 Fu: 3.46%

ADMET: Metabolism

CYP1A2-inhibitor: 0.196 CYP1A2-substrate: 0.956
CYP2C19-inhibitor: 0.617 CYP2C19-substrate: 0.86
CYP2C9-inhibitor: 0.247 CYP2C9-substrate: 0.871
CYP2D6-inhibitor: 0.055 CYP2D6-substrate: 0.535
CYP3A4-inhibitor: 0.767 CYP3A4-substrate: 0.921

ADMET: Excretion

Clearance (CL): 2.727 Half-life (T1/2): 0.746

ADMET: Toxicity

hERG Blockers: 0.014 Human Hepatotoxicity (H-HT): 0.175
Drug-inuced Liver Injury (DILI): 0.966 AMES Toxicity: 0.022
Rat Oral Acute Toxicity: 0.825 Maximum Recommended Daily Dose: 0.042
Skin Sensitization: 0.17 Carcinogencity: 0.113
Eye Corrosion: 0.003 Eye Irritation: 0.008
Respiratory Toxicity: 0.971
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002717 0.805 D01PZD 0.298
ENC001957 0.691 D0W7WC 0.274
ENC005569 0.691 D0Y7RW 0.255
ENC003865 0.685 D08UMH 0.250
ENC002715 0.656 D0H5MB 0.250
ENC002895 0.647 D07RGW 0.237
ENC002714 0.604 D0E4DW 0.235
ENC004926 0.604 D0Z9NZ 0.234
ENC004441 0.591 D0U5RT 0.234
ENC004927 0.591 D04OSE 0.232
*Note: the compound similarity was calculated by RDKIT.