NPs Basic Information

Name
Methyl 2,3,5-trihydroxytridecanoate
Molecular Formula C14H28O5
IUPAC Name*
methyl 2,3,5-trihydroxytridecanoate
SMILES
CCCCCCCCC(CC(C(C(=O)OC)O)O)O
InChI
InChI=1S/C14H28O5/c1-3-4-5-6-7-8-9-11(15)10-12(16)13(17)14(18)19-2/h11-13,15-17H,3-10H2,1-2H3
InChIKey
LPKQGWADLRMPAX-UHFFFAOYSA-N
Synonyms
LMA-P3
CAS NA
PubChem CID 56839943
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Lipids and lipid-like mol
      • Class: Fatty Acyls
        • Subclass: Fatty alcohols
          • Direct Parent: Fatty alcohols

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 276.37 ALogp: 2.6
HBD: 3 HBA: 5
Rotatable Bonds: 12 Lipinski's rule of five: Accepted
Polar Surface Area: 87.0 Aromatic Rings: 0
Heavy Atoms: 19 QED Weighted: 0.396

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.779 MDCK Permeability: 0.00003440
Pgp-inhibitor: 0.031 Pgp-substrate: 0.742
Human Intestinal Absorption (HIA): 0.652 20% Bioavailability (F20%): 0.959
30% Bioavailability (F30%): 0.039

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.442 Plasma Protein Binding (PPB): 69.89%
Volume Distribution (VD): 1.429 Fu: 35.97%

ADMET: Metabolism

CYP1A2-inhibitor: 0.021 CYP1A2-substrate: 0.345
CYP2C19-inhibitor: 0.016 CYP2C19-substrate: 0.369
CYP2C9-inhibitor: 0.012 CYP2C9-substrate: 0.734
CYP2D6-inhibitor: 0.005 CYP2D6-substrate: 0.08
CYP3A4-inhibitor: 0.006 CYP3A4-substrate: 0.058

ADMET: Excretion

Clearance (CL): 5.224 Half-life (T1/2): 0.844

ADMET: Toxicity

hERG Blockers: 0.037 Human Hepatotoxicity (H-HT): 0.121
Drug-inuced Liver Injury (DILI): 0.05 AMES Toxicity: 0.053
Rat Oral Acute Toxicity: 0.039 Maximum Recommended Daily Dose: 0.02
Skin Sensitization: 0.156 Carcinogencity: 0.015
Eye Corrosion: 0.003 Eye Irritation: 0.086
Respiratory Toxicity: 0.03
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000972 0.530 D0D9NY 0.341
ENC001612 0.508 D0I4DQ 0.333
ENC001377 0.486 D0XN8C 0.310
ENC001313 0.485 D05ATI 0.307
ENC000249 0.475 D0E4WR 0.303
ENC001159 0.455 D0G2KD 0.299
ENC001217 0.449 D0Z5BC 0.299
ENC001200 0.449 D0AY9Q 0.292
ENC002092 0.444 D07ILQ 0.291
ENC002562 0.436 D09ANG 0.289
*Note: the compound similarity was calculated by RDKIT.