NPs Basic Information

Name
Koninginin D
Molecular Formula C16H26O5
IUPAC Name*
(2S,4R,8R)-4,8-dihydroxy-2-[(1S)-1-hydroxyheptyl]-2,3,4,6,7,8-hexahydrochromen-5-one
SMILES
CCCCCC[C@@H]([C@@H]1C[C@H](C2=C(O1)[C@@H](CCC2=O)O)O)O
InChI
InChI=1S/C16H26O5/c1-2-3-4-5-6-10(17)14-9-13(20)15-11(18)7-8-12(19)16(15)21-14/h10,12-14,17,19-20H,2-9H2,1H3/t10-,12+,13+,14-/m0/s1
InChIKey
YSFPWLQJKYZZEG-ASEORRQLSA-N
Synonyms
Koninginin D; CHEMBL467402; SCHEMBL20203698; DTXSID901043583; 119903-56-9
CAS 119903-56-9
PubChem CID 10968536
ChEMBL ID CHEMBL467402
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Benzopyrans
        • Subclass: No Rank at Level Subclass
          • Direct Parent: Benzopyrans

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 298.37 ALogp: 1.1
HBD: 3 HBA: 5
Rotatable Bonds: 6 Lipinski's rule of five: Accepted
Polar Surface Area: 87.0 Aromatic Rings: 2
Heavy Atoms: 21 QED Weighted: 0.653

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.706 MDCK Permeability: 0.00003050
Pgp-inhibitor: 0.853 Pgp-substrate: 0.933
Human Intestinal Absorption (HIA): 0.765 20% Bioavailability (F20%): 0.913
30% Bioavailability (F30%): 0.051

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.411 Plasma Protein Binding (PPB): 44.59%
Volume Distribution (VD): 1.241 Fu: 49.38%

ADMET: Metabolism

CYP1A2-inhibitor: 0.016 CYP1A2-substrate: 0.476
CYP2C19-inhibitor: 0.016 CYP2C19-substrate: 0.349
CYP2C9-inhibitor: 0.009 CYP2C9-substrate: 0.545
CYP2D6-inhibitor: 0.004 CYP2D6-substrate: 0.123
CYP3A4-inhibitor: 0.012 CYP3A4-substrate: 0.094

ADMET: Excretion

Clearance (CL): 12.781 Half-life (T1/2): 0.82

ADMET: Toxicity

hERG Blockers: 0.021 Human Hepatotoxicity (H-HT): 0.208
Drug-inuced Liver Injury (DILI): 0.094 AMES Toxicity: 0.027
Rat Oral Acute Toxicity: 0.878 Maximum Recommended Daily Dose: 0.122
Skin Sensitization: 0.096 Carcinogencity: 0.296
Eye Corrosion: 0.011 Eye Irritation: 0.082
Respiratory Toxicity: 0.048
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002691 0.776 D0V0IX 0.320
ENC003134 0.758 D0I4DQ 0.296
ENC003975 0.722 D01WUA 0.292
ENC002643 0.676 D06FEA 0.283
ENC005927 0.676 D0L7AS 0.269
ENC002146 0.676 D0XN8C 0.258
ENC005892 0.608 D0N3NO 0.245
ENC005467 0.608 D00CTS 0.245
ENC005888 0.589 D00HCQ 0.235
ENC005887 0.506 D04RGA 0.235
*Note: the compound similarity was calculated by RDKIT.