NPs Basic Information

Name
(5R,6S)-5-(hydroxymethyl)-6-methyl-5,6-dihydro-1H,3H-pyrano[3,4-c]pyran-1-one
Molecular Formula C10H12O4
IUPAC Name*
5-(hydroxymethyl)-6-methyl-5,6-dihydro-3H-pyrano[3,4-c]pyran-1-one
SMILES
CC1OC=C2C(=O)OCC=C2C1CO
InChI
InChI=1S/C10H12O4/c1-6-8(4-11)7-2-3-13-10(12)9(7)5-14-6/h2,5-6,8,11H,3-4H2,1H3/t6-,8+/m0/s1
InChIKey
NBSLZWJIXPVCJN-POYBYMJQSA-N
Synonyms
NA
CAS NA
PubChem CID NA
ChEMBL ID NA
*Note: the IUPAC Name was calculated by STOUT. Reference: PMID:33906675.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Pyrans
        • Subclass: Pyranones and derivatives
          • Direct Parent: Dihydropyranones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 196.2 ALogp: 0.4
HBD: 1 HBA: 4
Rotatable Bonds: 1 Lipinski's rule of five: Accepted
Polar Surface Area: 55.8 Aromatic Rings: 2
Heavy Atoms: 14 QED Weighted: 0.629

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.572 MDCK Permeability: 0.00001300
Pgp-inhibitor: 0.002 Pgp-substrate: 0.001
Human Intestinal Absorption (HIA): 0.022 20% Bioavailability (F20%): 0.979
30% Bioavailability (F30%): 0.987

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.865 Plasma Protein Binding (PPB): 31.68%
Volume Distribution (VD): 1.142 Fu: 72.62%

ADMET: Metabolism

CYP1A2-inhibitor: 0.789 CYP1A2-substrate: 0.467
CYP2C19-inhibitor: 0.075 CYP2C19-substrate: 0.413
CYP2C9-inhibitor: 0.031 CYP2C9-substrate: 0.08
CYP2D6-inhibitor: 0.273 CYP2D6-substrate: 0.18
CYP3A4-inhibitor: 0.093 CYP3A4-substrate: 0.376

ADMET: Excretion

Clearance (CL): 6.326 Half-life (T1/2): 0.836

ADMET: Toxicity

hERG Blockers: 0.029 Human Hepatotoxicity (H-HT): 0.809
Drug-inuced Liver Injury (DILI): 0.167 AMES Toxicity: 0.452
Rat Oral Acute Toxicity: 0.594 Maximum Recommended Daily Dose: 0.692
Skin Sensitization: 0.672 Carcinogencity: 0.96
Eye Corrosion: 0.003 Eye Irritation: 0.092
Respiratory Toxicity: 0.228
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC000971 1.000 D0Z8EX 0.221
ENC004851 1.000 D0CL9S 0.214
ENC004819 1.000 D07TQV 0.209
ENC006131 1.000 D0Z9QR 0.209
ENC006132 1.000 D06HLY 0.209
ENC006071 0.773 D06FDR 0.205
ENC003769 0.718 D0MM2L 0.203
ENC003974 0.718 D0S9SD 0.203
ENC003686 0.718 D0R2KF 0.200
ENC004850 0.718 D0S0NK 0.198
*Note: the compound similarity was calculated by RDKIT.