NPs Basic Information

Name
11S, 13R-(+)-Phomacumarin A
Molecular Formula C17H20O4
IUPAC Name*
7-hydroxy-8-methyl-5-(4-methyl-3-oxohexan-2-yl)chromen-2-one
SMILES
CCC(C)C(=O)C(C)c1cc(O)c(C)c2oc(=O)ccc12
InChI
InChI=1S/C17H20O4/c1-5-9(2)16(20)10(3)13-8-14(18)11(4)17-12(13)6-7-15(19)21-17/h6-10,18H,5H2,1-4H3/t9-,10+/m1/s1
InChIKey
QMZHYXVNJPDLAY-ZJUUUORDSA-N
Synonyms
NA
CAS NA
PubChem CID NA
ChEMBL ID NA
*Note: the IUPAC Name was calculated by STOUT. Reference: PMID:33906675.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Phenylpropanoids and poly
      • Class: Coumarins and derivatives
        • Subclass: Hydroxycoumarins
          • Direct Parent: 7-hydroxycoumarins

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 288.34 ALogp: 3.5
HBD: 1 HBA: 4
Rotatable Bonds: 4 Lipinski's rule of five: Accepted
Polar Surface Area: 67.5 Aromatic Rings: 2
Heavy Atoms: 21 QED Weighted: 0.854

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.688 MDCK Permeability: 0.00001660
Pgp-inhibitor: 0.002 Pgp-substrate: 0.054
Human Intestinal Absorption (HIA): 0.007 20% Bioavailability (F20%): 0.106
30% Bioavailability (F30%): 0.115

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.122 Plasma Protein Binding (PPB): 97.43%
Volume Distribution (VD): 0.771 Fu: 2.55%

ADMET: Metabolism

CYP1A2-inhibitor: 0.961 CYP1A2-substrate: 0.96
CYP2C19-inhibitor: 0.566 CYP2C19-substrate: 0.471
CYP2C9-inhibitor: 0.784 CYP2C9-substrate: 0.901
CYP2D6-inhibitor: 0.277 CYP2D6-substrate: 0.48
CYP3A4-inhibitor: 0.665 CYP3A4-substrate: 0.513

ADMET: Excretion

Clearance (CL): 11.379 Half-life (T1/2): 0.661

ADMET: Toxicity

hERG Blockers: 0.025 Human Hepatotoxicity (H-HT): 0.872
Drug-inuced Liver Injury (DILI): 0.963 AMES Toxicity: 0.022
Rat Oral Acute Toxicity: 0.868 Maximum Recommended Daily Dose: 0.548
Skin Sensitization: 0.366 Carcinogencity: 0.216
Eye Corrosion: 0.119 Eye Irritation: 0.599
Respiratory Toxicity: 0.808
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC005368 0.544 D0O6KE 0.337
ENC002605 0.465 D0Z1WA 0.329
ENC002803 0.420 D06GIP 0.308
ENC005367 0.403 D0FA2O 0.304
ENC005099 0.372 D07JGT 0.291
ENC005100 0.368 D0G5UB 0.289
ENC006097 0.364 D08HUC 0.278
ENC003428 0.363 D06REO 0.278
ENC006098 0.342 D08SKH 0.275
ENC004413 0.337 D0A3HB 0.268
*Note: the compound similarity was calculated by RDKIT.