NPs Basic Information

Name
cyclo-(N-Benzyl-Trp-Pro)
Molecular Formula C23H23N3O2
IUPAC Name*
2-benzyl-3-(1H-indol-3-ylmethyl)-6,7,8,8a-tetrahydro-3H-pyrrolo[1,2-a]pyrazine-1,4-dione
SMILES
O=C1C(Cc2c[nH]c3ccccc23)N(Cc2ccccc2)C(=O)C2CCCN12
InChI
InChI=1S/C23H23N3O2/c27-22-20-11-6-12-25(20)23(28)21(26(22)15-16-7-2-1-3-8-16)13-17-14-24-19-10-5-4-9-18(17)19/h1-5,7-10,14,20-21,24H,6,11-13,15H2
InChIKey
RJTMZZLXYDWANK-UHFFFAOYSA-N
Synonyms
NA
CAS NA
PubChem CID NA
ChEMBL ID NA
*Note: the IUPAC Name was calculated by STOUT. Reference: PMID:33906675.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organic acids and derivat
      • Class: Carboxylic acids and deri
        • Subclass: Amino acids, peptides, an
          • Direct Parent: Alpha amino acids and der

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 373.46 ALogp: 3.1
HBD: 1 HBA: 2
Rotatable Bonds: 4 Lipinski's rule of five: Accepted
Polar Surface Area: 56.4 Aromatic Rings: 5
Heavy Atoms: 28 QED Weighted: 0.754

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.776 MDCK Permeability: 0.00002260
Pgp-inhibitor: 0.17 Pgp-substrate: 0.002
Human Intestinal Absorption (HIA): 0.008 20% Bioavailability (F20%): 0.021
30% Bioavailability (F30%): 0.012

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.151 Plasma Protein Binding (PPB): 95.79%
Volume Distribution (VD): 0.541 Fu: 4.73%

ADMET: Metabolism

CYP1A2-inhibitor: 0.195 CYP1A2-substrate: 0.392
CYP2C19-inhibitor: 0.955 CYP2C19-substrate: 0.331
CYP2C9-inhibitor: 0.872 CYP2C9-substrate: 0.902
CYP2D6-inhibitor: 0.13 CYP2D6-substrate: 0.592
CYP3A4-inhibitor: 0.936 CYP3A4-substrate: 0.418

ADMET: Excretion

Clearance (CL): 11.636 Half-life (T1/2): 0.76

ADMET: Toxicity

hERG Blockers: 0.05 Human Hepatotoxicity (H-HT): 0.96
Drug-inuced Liver Injury (DILI): 0.919 AMES Toxicity: 0.013
Rat Oral Acute Toxicity: 0.788 Maximum Recommended Daily Dose: 0.609
Skin Sensitization: 0.212 Carcinogencity: 0.046
Eye Corrosion: 0.003 Eye Irritation: 0.009
Respiratory Toxicity: 0.054
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC004971 0.651 D02DMQ 0.441
ENC000975 0.554 D0B6CC 0.420
ENC004610 0.554 D01TSI 0.404
ENC001912 0.550 D0V3ZA 0.385
ENC004531 0.550 D09NNH 0.373
ENC004934 0.550 D0SP3D 0.361
ENC005997 0.477 D07VHR 0.358
ENC003208 0.469 D08FTG 0.337
ENC001979 0.468 D0E1WI 0.336
ENC005478 0.468 D08VRO 0.331
*Note: the compound similarity was calculated by RDKIT.