NPs Basic Information

Name
Penicimenolidyu B
Molecular Formula C13H16O7
IUPAC Name*
(3-hydroxy-4-methoxy-4-oxobutyl) 2,4-dihydroxy-6-methylbenzoate
SMILES
CC1=CC(=CC(=C1C(=O)OCCC(C(=O)OC)O)O)O
InChI
InChI=1S/C13H16O7/c1-7-5-8(14)6-10(16)11(7)13(18)20-4-3-9(15)12(17)19-2/h5-6,9,14-16H,3-4H2,1-2H3
InChIKey
BQDWYWGYJZDXQX-UHFFFAOYSA-N
Synonyms
Penicimenolidyu B
CAS NA
PubChem CID 146684381
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Benzenoids
      • Class: Benzene and substituted d
        • Subclass: Benzoic acids and derivat
          • Direct Parent: p-Hydroxybenzoic acid alk

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 284.26 ALogp: 1.6
HBD: 3 HBA: 7
Rotatable Bonds: 7 Lipinski's rule of five: Accepted
Polar Surface Area: 113.0 Aromatic Rings: 1
Heavy Atoms: 20 QED Weighted: 0.688

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -5.064 MDCK Permeability: 0.00001900
Pgp-inhibitor: 0.001 Pgp-substrate: 0.113
Human Intestinal Absorption (HIA): 0.274 20% Bioavailability (F20%): 0.451
30% Bioavailability (F30%): 0.932

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.593 Plasma Protein Binding (PPB): 63.77%
Volume Distribution (VD): 0.756 Fu: 46.61%

ADMET: Metabolism

CYP1A2-inhibitor: 0.846 CYP1A2-substrate: 0.61
CYP2C19-inhibitor: 0.109 CYP2C19-substrate: 0.063
CYP2C9-inhibitor: 0.068 CYP2C9-substrate: 0.815
CYP2D6-inhibitor: 0.126 CYP2D6-substrate: 0.241
CYP3A4-inhibitor: 0.3 CYP3A4-substrate: 0.155

ADMET: Excretion

Clearance (CL): 11.832 Half-life (T1/2): 0.929

ADMET: Toxicity

hERG Blockers: 0.031 Human Hepatotoxicity (H-HT): 0.033
Drug-inuced Liver Injury (DILI): 0.421 AMES Toxicity: 0.029
Rat Oral Acute Toxicity: 0.002 Maximum Recommended Daily Dose: 0.207
Skin Sensitization: 0.349 Carcinogencity: 0.012
Eye Corrosion: 0.014 Eye Irritation: 0.747
Respiratory Toxicity: 0.24
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC004205 0.712 D0U0OT 0.310
ENC002155 0.635 D02UFG 0.257
ENC002653 0.591 D0Y6KO 0.253
ENC000729 0.582 D0I5HV 0.253
ENC005228 0.581 D0O6KE 0.253
ENC002928 0.581 D0M8RC 0.250
ENC003332 0.508 D0J1VY 0.247
ENC005900 0.475 D0YF3X 0.244
ENC000674 0.474 D0XN1F 0.241
ENC005901 0.468 D08HVR 0.233
*Note: the compound similarity was calculated by RDKIT.