NPs Basic Information

Name
(6R)-6-[(1R,2S,3R)-3-hydroxy-2,3-dimethylcyclopentyl]-2-methylheptane-2,3,6-triol
Molecular Formula C15H30O4
IUPAC Name*
(6R)-6-[(1R,2S,3R)-3-hydroxy-2,3-dimethylcyclopentyl]-2-methylheptane-2,3,6-triol
SMILES
C[C@H]1[C@@H](CC[C@@]1(C)O)[C@@](C)(CCC(C(C)(C)O)O)O
InChI
InChI=1S/C15H30O4/c1-10-11(6-8-14(10,4)18)15(5,19)9-7-12(16)13(2,3)17/h10-12,16-19H,6-9H2,1-5H3/t10-,11+,12?,14+,15+/m0/s1
InChIKey
SRVFQFPFJNHMEK-IVGFHQPOSA-N
Synonyms
NA
CAS NA
PubChem CID 139591330
ChEMBL ID NA
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Lipids and lipid-like mol
      • Class: Prenol lipids
        • Subclass: Sesquiterpenoids
          • Direct Parent: Sesquiterpenoids

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 274.4 ALogp: 0.9
HBD: 4 HBA: 4
Rotatable Bonds: 5 Lipinski's rule of five: Accepted
Polar Surface Area: 80.9 Aromatic Rings: 1
Heavy Atoms: 19 QED Weighted: 0.618

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.471 MDCK Permeability: 0.00002240
Pgp-inhibitor: 0.002 Pgp-substrate: 0.119
Human Intestinal Absorption (HIA): 0.081 20% Bioavailability (F20%): 0.037
30% Bioavailability (F30%): 0.006

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.927 Plasma Protein Binding (PPB): 46.24%
Volume Distribution (VD): 0.848 Fu: 31.92%

ADMET: Metabolism

CYP1A2-inhibitor: 0.017 CYP1A2-substrate: 0.13
CYP2C19-inhibitor: 0.012 CYP2C19-substrate: 0.808
CYP2C9-inhibitor: 0.014 CYP2C9-substrate: 0.431
CYP2D6-inhibitor: 0.004 CYP2D6-substrate: 0.13
CYP3A4-inhibitor: 0.012 CYP3A4-substrate: 0.207

ADMET: Excretion

Clearance (CL): 4.532 Half-life (T1/2): 0.645

ADMET: Toxicity

hERG Blockers: 0.042 Human Hepatotoxicity (H-HT): 0.056
Drug-inuced Liver Injury (DILI): 0.051 AMES Toxicity: 0.009
Rat Oral Acute Toxicity: 0.011 Maximum Recommended Daily Dose: 0.013
Skin Sensitization: 0.052 Carcinogencity: 0.033
Eye Corrosion: 0.036 Eye Irritation: 0.884
Respiratory Toxicity: 0.008
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
D02ZGI 0.275
D07QKN 0.270
D0T2PL 0.226
D02VPX 0.219
D05BTM 0.215
D0N1TP 0.204
D05SHK 0.200
D0D9NY 0.194
D02LTL 0.187
D0L7AS 0.184
*Note: the compound similarity was calculated by RDKIT.