NPs Basic Information

Name
Penicidone D
Molecular Formula C20H21NO7
IUPAC Name*
methyl 3,5-dimethoxy-2-[5-methoxy-4-oxo-6-[(E)-prop-1-enyl]-1H-pyridine-3-carbonyl]benzoate
SMILES
C/C=C/C1=C(C(=O)C(=CN1)C(=O)C2=C(C=C(C=C2OC)OC)C(=O)OC)OC
InChI
InChI=1S/C20H21NO7/c1-6-7-14-19(27-4)18(23)13(10-21-14)17(22)16-12(20(24)28-5)8-11(25-2)9-15(16)26-3/h6-10H,1-5H3,(H,21,23)/b7-6+
InChIKey
QBVKMDADEIDLEW-VOTSOKGWSA-N
Synonyms
Penicidone D; CHEMBL3593569; BDBM50104670; J3.501.544B
CAS NA
PubChem CID 122182015
ChEMBL ID CHEMBL3593569
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organic oxygen compounds
      • Class: Organooxygen compounds
        • Subclass: Carbonyl compounds
          • Direct Parent: Aryl-phenylketones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 387.4 ALogp: 2.7
HBD: 1 HBA: 8
Rotatable Bonds: 8 Lipinski's rule of five: Accepted
Polar Surface Area: 100.0 Aromatic Rings: 2
Heavy Atoms: 28 QED Weighted: 0.574

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.89 MDCK Permeability: 0.00001250
Pgp-inhibitor: 0.994 Pgp-substrate: 0.001
Human Intestinal Absorption (HIA): 0.023 20% Bioavailability (F20%): 0.007
30% Bioavailability (F30%): 0.927

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.436 Plasma Protein Binding (PPB): 73.46%
Volume Distribution (VD): 1.01 Fu: 14.80%

ADMET: Metabolism

CYP1A2-inhibitor: 0.819 CYP1A2-substrate: 0.971
CYP2C19-inhibitor: 0.766 CYP2C19-substrate: 0.563
CYP2C9-inhibitor: 0.765 CYP2C9-substrate: 0.897
CYP2D6-inhibitor: 0.209 CYP2D6-substrate: 0.883
CYP3A4-inhibitor: 0.715 CYP3A4-substrate: 0.542

ADMET: Excretion

Clearance (CL): 6.276 Half-life (T1/2): 0.503

ADMET: Toxicity

hERG Blockers: 0.076 Human Hepatotoxicity (H-HT): 0.816
Drug-inuced Liver Injury (DILI): 0.822 AMES Toxicity: 0.226
Rat Oral Acute Toxicity: 0.886 Maximum Recommended Daily Dose: 0.54
Skin Sensitization: 0.62 Carcinogencity: 0.107
Eye Corrosion: 0.003 Eye Irritation: 0.085
Respiratory Toxicity: 0.694
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC002043 0.767 D09DHY 0.322
ENC003039 0.656 D02LZB 0.302
ENC001897 0.633 D0G8NJ 0.288
ENC003307 0.531 D0A8FB 0.283
ENC005979 0.505 D0J4JM 0.282
ENC004340 0.486 D09HDR 0.275
ENC004806 0.474 D06GCK 0.272
ENC005977 0.465 D01FFA 0.271
ENC005931 0.440 D0AO5H 0.264
ENC002468 0.430 D0C1SF 0.259
*Note: the compound similarity was calculated by RDKIT.