NPs Basic Information

Name
6-Hydroxymethyleugenin
Molecular Formula C12H12O5
IUPAC Name*
5-hydroxy-6-(hydroxymethyl)-7-methoxy-2-methylchromen-4-one
SMILES
CC1=CC(=O)C2=C(C(=C(C=C2O1)OC)CO)O
InChI
InChI=1S/C12H12O5/c1-6-3-8(14)11-10(17-6)4-9(16-2)7(5-13)12(11)15/h3-4,13,15H,5H2,1-2H3
InChIKey
NDYIQSCPWYVZEJ-UHFFFAOYSA-N
Synonyms
6-hydroxymethyleugenin; 6-Hydroxymethyleugenetin; MLS004257386; CHEMBL464246; SMR003082517; 2-Methyl-5-hydroxy-6-(hydroxymethyl)-7-methoxychromone; 5-hydroxy-6-(hydroxymethyl)-7-methoxy-2-methylchromen-4-one
CAS NA
PubChem CID 12084957
ChEMBL ID CHEMBL464246
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Organoheterocyclic compou
      • Class: Benzopyrans
        • Subclass: 1-benzopyrans
          • Direct Parent: Chromones

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 236.22 ALogp: 1.2
HBD: 2 HBA: 5
Rotatable Bonds: 2 Lipinski's rule of five: Accepted
Polar Surface Area: 76.0 Aromatic Rings: 2
Heavy Atoms: 17 QED Weighted: 0.831

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.878 MDCK Permeability: 0.00000925
Pgp-inhibitor: 0.002 Pgp-substrate: 0.888
Human Intestinal Absorption (HIA): 0.037 20% Bioavailability (F20%): 0.017
30% Bioavailability (F30%): 0.922

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.073 Plasma Protein Binding (PPB): 73.65%
Volume Distribution (VD): 0.885 Fu: 30.54%

ADMET: Metabolism

CYP1A2-inhibitor: 0.912 CYP1A2-substrate: 0.963
CYP2C19-inhibitor: 0.039 CYP2C19-substrate: 0.698
CYP2C9-inhibitor: 0.044 CYP2C9-substrate: 0.702
CYP2D6-inhibitor: 0.028 CYP2D6-substrate: 0.714
CYP3A4-inhibitor: 0.036 CYP3A4-substrate: 0.359

ADMET: Excretion

Clearance (CL): 7.137 Half-life (T1/2): 0.915

ADMET: Toxicity

hERG Blockers: 0.014 Human Hepatotoxicity (H-HT): 0.05
Drug-inuced Liver Injury (DILI): 0.44 AMES Toxicity: 0.478
Rat Oral Acute Toxicity: 0.057 Maximum Recommended Daily Dose: 0.071
Skin Sensitization: 0.374 Carcinogencity: 0.043
Eye Corrosion: 0.003 Eye Irritation: 0.299
Respiratory Toxicity: 0.15
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC004732 1.000 D06GCK 0.386
ENC001417 0.759 D0G4KG 0.356
ENC001495 0.712 D04AIT 0.284
ENC003982 0.594 D0FA2O 0.274
ENC001518 0.593 D07MGA 0.274
ENC002186 0.569 D0K8KX 0.262
ENC006031 0.561 D07MUN 0.254
ENC003365 0.554 D0E9CD 0.246
ENC002335 0.533 D0N0OU 0.241
ENC000962 0.529 D0J4IX 0.241
*Note: the compound similarity was calculated by RDKIT.