NPs Basic Information

Name
6,8-Dihydroxy-3-(hydroxymethyl)-1H-2-benzopyran-1-one
Molecular Formula C10H8O5
IUPAC Name*
6,8-dihydroxy-3-(hydroxymethyl)isochromen-1-one
SMILES
C1=C2C=C(OC(=O)C2=C(C=C1O)O)CO
InChI
InChI=1S/C10H8O5/c11-4-7-2-5-1-6(12)3-8(13)9(5)10(14)15-7/h1-3,11-13H,4H2
InChIKey
BKFBBKNNGTZBPF-UHFFFAOYSA-N
Synonyms
62209-16-9; 6,8-dihydroxy-3-hydroxymethylisocoumarin; CHEMBL539432; 6,8-Dihydroxy-3-(hydroxymethyl)-1H-2-benzopyran-1-one; SCHEMBL17866981; DTXSID80433771; 3-(Hydroxymethyl)-6,8-dihydroxyisocoumarin; 6,8-dihydroxy-3-hydroxymethyl isocou-marin
CAS 62209-16-9
PubChem CID 9990614
ChEMBL ID CHEMBL539432
*Note: the IUPAC Name was collected from PubChem.
Chemical Classification:
  • Kingdom: Organic compounds
    • Superclass: Phenylpropanoids and poly
      • Class: Isocoumarins and derivati
        • Subclass: No Rank at Level Subclass
          • Direct Parent: Isocoumarins and derivati

ClassyFire Version 1.0
PMID:27867422

NPs Species Source

Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference
Endophyte ID Endophyte Name Family Genus Taxonomy ID GenBank ID Closest GenBank ID Reference

NPs Content

*Note: The vaules in Content Percentage are calculated by dividing the content value by the maximum content value in NP Content.
**Note: The units with different NP content, due to their incomparable values, are separated into different tables.

NPs Biological Activity

Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name
Bioactivity Name Target ID Target Name Target Type Target Organism Target Organism ID Potency of Bioactivity Activity Type Value Unit Endophyte ID Endophyte Name

NPs Physi-Chem Properties

Molecular Weight: 208.17 ALogp: 0.9
HBD: 3 HBA: 5
Rotatable Bonds: 1 Lipinski's rule of five: Accepted
Polar Surface Area: 87.0 Aromatic Rings: 2
Heavy Atoms: 15 QED Weighted: 0.652

NPs ADMET Properties*

ADMET: Absorption

Caco-2 Permeability: -4.858 MDCK Permeability: 0.00000975
Pgp-inhibitor: 0.001 Pgp-substrate: 0.953
Human Intestinal Absorption (HIA): 0.031 20% Bioavailability (F20%): 0.969
30% Bioavailability (F30%): 0.999

ADMET: Distribution

Blood-Brain-Barrier Penetration (BBB): 0.036 Plasma Protein Binding (PPB): 58.60%
Volume Distribution (VD): 0.724 Fu: 38.29%

ADMET: Metabolism

CYP1A2-inhibitor: 0.904 CYP1A2-substrate: 0.217
CYP2C19-inhibitor: 0.049 CYP2C19-substrate: 0.057
CYP2C9-inhibitor: 0.092 CYP2C9-substrate: 0.856
CYP2D6-inhibitor: 0.094 CYP2D6-substrate: 0.382
CYP3A4-inhibitor: 0.088 CYP3A4-substrate: 0.089

ADMET: Excretion

Clearance (CL): 10.389 Half-life (T1/2): 0.91

ADMET: Toxicity

hERG Blockers: 0.037 Human Hepatotoxicity (H-HT): 0.142
Drug-inuced Liver Injury (DILI): 0.896 AMES Toxicity: 0.136
Rat Oral Acute Toxicity: 0.041 Maximum Recommended Daily Dose: 0.119
Skin Sensitization: 0.914 Carcinogencity: 0.036
Eye Corrosion: 0.045 Eye Irritation: 0.937
Respiratory Toxicity: 0.192
*Note: the ADMET properties was calculated by ADMETlab 2.0. Reference: PMID: 33893803.

Similar Compounds*

Compounds similar to EMNPD with top10 similarity:

Similar NPs Similar Drugs
NPs ID NPs 2D Structure Similarity Score TTD ID Drug 2D Structure Similarity Score
ENC001569 0.740 D04AIT 0.375
ENC004556 0.740 D0K8KX 0.365
ENC004676 0.681 D07EXH 0.327
ENC005370 0.681 D07MGA 0.308
ENC001542 0.681 D02UFG 0.266
ENC002509 0.673 D0M8RC 0.258
ENC005393 0.661 D06GCK 0.250
ENC002933 0.647 D0FA2O 0.239
ENC005299 0.638 D08HVR 0.238
ENC004995 0.638 D07MOX 0.237
*Note: the compound similarity was calculated by RDKIT.